Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
llphLLP homolog, long-term synaptic facilitation factor. (124 aa)    
Predicted Functional Partners:
znf593
Zinc finger protein 593.
   
 
 0.875
rpl3
Ribosomal protein L3.
    
 
 0.873
mrto4
MRT4 homolog, ribosome maturation factor.
   
 
 0.864
tma16
Translation machinery associated 16 homolog.
   
 
 0.860
nifk
Nucleolar protein interacting with the FHA domain of MKI67.
   
   0.855
ENSECRP00000016311
annotation not available
    
   0.845
brix1
Biogenesis of ribosomes BRX1.
   
   0.839
nip7
Nucleolar pre-rRNA processing protein NIP7.
   
   0.839
eif6
Eukaryotic translation initiation factor 6.
   
 
 0.828
ccdc86
Coiled-coil domain containing 86.
   
   0.817
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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