Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114647419C-factor-like. (254 aa)    
Predicted Functional Partners:
st18
ST18 C2H2C-type zinc finger transcription factor.
     
  0.496
myt1
Myelin transcription factor 1.
     
  0.496
myt1l
Myelin transcription factor 1 like.
     
  0.496
tgs1
Trimethylguanosine synthase 1.
    
   0.455
cbfa2t2
CBFA2/RUNX1 partner transcriptional co-repressor 2.
   
 0.450
tbxas1
Thromboxane A synthase 1.
   
 0.450
cbfa2t3
CBFA2/RUNX1 partner transcriptional co-repressor 3.
   
 0.450
LOC114661257
Cytochrome P450 3A30-like.
   
 0.450
LOC114642102
Cytochrome P450 3A40-like.
   
 0.450
med27
Mediator complex subunit 27.
   
 0.450
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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