Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
bivmBasic, immunoglobulin-like variable motif containing. (505 aa)    
Predicted Functional Partners:
ercc6
ERCC excision repair 6, chromatin remodeling factor.
  
 0.973
ercc3
ERCC excision repair 3, TFIIH core complex helicase subunit.
   
 0.969
xpa
XPA, DNA damage recognition and repair factor.
    
 0.967
ercc2
ERCC excision repair 2, TFIIH core complex helicase subunit.
   
 0.962
ercc4
ERCC excision repair 4, endonuclease catalytic subunit.
   
 0.948
fancm
FA complementation group M.
   
 0.941
gtf2h1
General transcription factor IIH subunit 1.
    
 0.938
wrn
WRN RecQ like helicase.
  
 0.932
ercc1
ERCC excision repair 1, endonuclease non-catalytic subunit.
    
 0.931
mus81
MUS81 structure-specific endonuclease subunit.
   
 0.924
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.