STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000001524annotation not available (323 aa)    
Predicted Functional Partners:
ENSECRP00000006107
annotation not available
    
 
 0.977
pde6d
Phosphodiesterase 6D.
    
 
 0.965
LOC114659684
GTP-binding nuclear protein Ran.
   
 0.934
ran
RAN, member RAS oncogene family.
   
 0.934
ENSECRP00000029575
annotation not available
   
 0.934
LOC114650950
E3 SUMO-protein ligase RanBP2-like.
   
 0.919
rangap1
Ran GTPase activating protein 1.
   
 
 0.892
ranbp1
RAN binding protein 1.
   
 0.888
rpgrip1l
RPGRIP1 like.
    
 
 0.828
nphp4
Nephrocystin 4.
   
 
 0.800
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.