Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
znf827Zinc finger protein 827. (1402 aa)    
Predicted Functional Partners:
rbbp4
RB binding protein 4, chromatin remodeling factor.
    
 0.779
LOC114641485
Histone-binding protein RBBP7.
    
 0.779
brca1
BRCA1 DNA repair associated.
    
   0.741
dclre1b
DNA cross-link repair 1B.
    
 
 0.642
srbd1
S1 RNA binding domain 1.
    
 
 0.630
ENSECRP00000011256
annotation not available
    
  0.585
rnf166
Ring finger protein 166.
    
 0.579
naif1
Nuclear apoptosis inducing factor 1.
      
 0.537
gart
annotation not available
     
  0.531
znf276
Zinc finger protein 276.
      
 0.529
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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