STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114649271Sodium- and chloride-dependent GABA transporter 2-like. (568 aa)    
Predicted Functional Partners:
gnl3l
G protein nucleolar 3 like.
      
 0.529
irak1
Interleukin 1 receptor associated kinase 1.
      
 0.529
gphn
Gephyrin.
     
 0.483
slc6a5
Solute carrier family 6 member 5.
     
  0.470
LOC114649959
Sodium-dependent proline transporter-like.
     
  0.470
LOC114648210
Sodium- and chloride-dependent GABA transporter 1-like.
     
  0.470
slc6a9
Solute carrier family 6 member 9.
     
  0.470
LOC114662323
Sodium- and chloride-dependent neutral and basic amino acid transporter B(0+)-like.
     
  0.470
ENSECRP00000021250
annotation not available
     
  0.470
ENSECRP00000021581
annotation not available
     
  0.470
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.