STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114653361Desmocollin-3-like. (831 aa)    
Predicted Functional Partners:
jup
Junction plakoglobin.
   
 0.993
pkp2
Plakophilin 2.
   
 0.992
LOC114653359
Desmoglein-2-like.
   
 0.979
pkp1
Plakophilin 1.
   
 0.974
ctnnb1
Catenin beta 1.
   
 0.929
perp
P53 apoptosis effector related to PMP22.
   
 
 0.909
pkp3
Plakophilin 3.
   
 0.887
dsp
Desmoplakin.
   
 0.813
ENSECRP00000017526
annotation not available
   
 0.813
ENSECRP00000017543
annotation not available
   
 0.813
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (22%) [HD]