STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114650788Cytochrome c oxidase assembly factor 5. (112 aa)    
Predicted Functional Partners:
LOC114650864
Cytochrome c oxidase copper chaperone.
   
  
 0.797
ENSECRP00000012474
annotation not available
   
  
 0.710
ENSECRP00000032807
annotation not available
   
 
 0.684
gfer
Growth factor, augmenter of liver regeneration.
   
  
 0.658
timm9
Translocase of inner mitochondrial membrane 9.
   
  
 0.657
mrpl51
Mitochondrial ribosomal protein L51.
   
  
 0.650
mrpl20
Mitochondrial ribosomal protein L20.
   
  
 0.629
tomm7
Translocase of outer mitochondrial membrane 7.
   
  
 0.599
ENSECRP00000018799
annotation not available
   
  
 0.593
mrpl49
Mitochondrial ribosomal protein L49.
   
  
 0.586
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.