Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nfyaNuclear transcription factor Y subunit alpha. (361 aa)    
Predicted Functional Partners:
nfyb
Nuclear transcription factor Y subunit beta.
   
 0.999
nfyc
Nuclear transcription factor Y subunit gamma.
    
 0.999
ENSECRP00000020478
annotation not available
    
 0.977
sp1
Sp1 transcription factor.
    
 0.973
ep300
E1A binding protein p300.
    
 0.966
tp53
Tumor protein p53.
    
 
 0.964
ciita
Class II major histocompatibility complex transactivator.
     
 0.936
tbp
TATA-box binding protein.
    
 0.925
LOC114666721
TATA-box-binding protein-like.
    
 0.925
tbpl1
TATA-box binding protein like 1.
    
 0.924
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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