STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traf6TNF receptor associated factor 6. (566 aa)    
Predicted Functional Partners:
map3k7
Mitogen-activated protein kinase kinase kinase 7.
    
 0.999
myd88
MYD88 innate immune signal transduction adaptor.
    
 0.999
ube2n
Ubiquitin conjugating enzyme E2 N.
    
 0.999
tab3
TGF-beta activated kinase 1 (MAP3K7) binding protein 3.
    
 0.999
irak1
Interleukin 1 receptor associated kinase 1.
   
 0.999
tab1
TGF-beta activated kinase 1 (MAP3K7) binding protein 1.
    
 0.999
sqstm1
Sequestosome 1.
    
 0.999
eda2r
Ectodysplasin A2 receptor.
    
 0.998
tifa
TRAF interacting protein with forkhead associated domain.
    
 0.998
tnfaip3
TNF alpha induced protein 3.
    
 0.998
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.