STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ostm1Osteoclastogenesis associated transmembrane protein 1. (336 aa)    
Predicted Functional Partners:
LOC114651929
Chloride channel protein C-like.
    
 0.942
clcn6
Chloride voltage-gated channel 6.
    
 0.942
ENSECRP00000020548
annotation not available
    
 0.942
ENSECRP00000020938
annotation not available
    
 0.942
LOC114661167
H(+)/Cl(-) exchange transporter 7-like.
    
 0.942
trabd
TraB domain containing.
      
 0.885
wdyhv1
WDYHV motif containing 1.
      
 0.880
qtrt1
Queuine tRNA-ribosyltransferase catalytic subunit 1.
      
 0.880
tmed6
Transmembrane p24 trafficking protein 6.
      
 0.872
plekhm1
Pleckstrin homology and RUN domain containing M1.
      
 0.753
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.