STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmaaMetabolism of cobalamin associated A. (418 aa)    
Predicted Functional Partners:
mmut
methylmalonyl-CoA mutase.
  
 
 0.956
mcee
methylmalonyl-CoA epimerase.
  
  
 0.760
setd4
SET domain containing 4.
    
 0.715
setd3
SET domain containing 3, actin histidine methyltransferase.
    
 0.715
rps27a
Ribosomal protein S27a.
    
   0.685
LOC114649268
Crystal protein-like.
     
 0.648
ache
Acetylcholinesterase (Cartwright blood group).
     
 0.648
pccb
propionyl-CoA carboxylase subunit beta.
  
   
 0.607
mmab
Metabolism of cobalamin associated B.
      
 0.584
mmadhc
Metabolism of cobalamin associated D.
      
 0.574
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.