STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114650267Cytochrome b-245 heavy chain. (564 aa)    
Predicted Functional Partners:
ncf1
Neutrophil cytosolic factor 1.
   
 0.994
ncf4
Neutrophil cytosolic factor 4.
   
 0.986
LOC114657575
Cytochrome b-245 light chain.
   
 0.978
ncf2
Neutrophil cytosolic factor 2.
   
 0.972
nox4
NADPH oxidase 4.
  
 
0.935
duoxa2
Dual oxidase maturation factor 2.
   
 0.908
ripk3
Receptor interacting serine/threonine kinase 3.
    
 0.907
camk2g
Calcium/calmodulin dependent protein kinase II gamma.
   
 0.899
LOC114658150
NADPH oxidase activator 1-like.
   
 0.895
nampt
Nicotinamide phosphoribosyltransferase.
     
  0.891
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.