STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000001854annotation not available (143 aa)    
Predicted Functional Partners:
ENSECRP00000011256
annotation not available
    
 0.779
wdr18
WD repeat domain 18.
   
 0.640
rps14
Ribosomal protein S14.
   
  0.613
tex10
Testis expressed 10.
    
 0.608
rhbdl3
Rhomboid like 3.
    
  0.595
pes1
Pescadillo ribosomal biogenesis factor 1.
   
 0.594
ripk4
Receptor interacting serine/threonine kinase 4.
    
 0.540
LOC114651579
H-2 class II histocompatibility antigen, A-U alpha chain-like.
   
  0.540
LOC114669376
H-2 class II histocompatibility antigen, A-U alpha chain-like.
   
  0.540
rpl30
Ribosomal protein L30.
    
  0.524
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.