Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
slc22a23Solute carrier family 22 member 23. (642 aa)    
Predicted Functional Partners:
pla2g4a
Phospholipase A2 group IVA.
    
 0.744
cdh4
Cadherin 4.
      
 0.676
txlnb
Taxilin beta.
      
 0.657
slc22a18
Solute carrier family 22 member 18.
    
 0.621
ints1
Integrator complex subunit 1.
    
 0.597
ints13
Integrator complex subunit 13.
    
 0.591
LOC114666002
Integrator complex subunit 9-like.
    
 0.591
ints11
Integrator complex subunit 11.
    
 0.589
ints4
Integrator complex subunit 4.
    
 0.587
ints7
Integrator complex subunit 7.
    
 0.586
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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