Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sipa1Signal-induced proliferation-associated 1. (1226 aa)    
Predicted Functional Partners:
afdn
Afadin, adherens junction formation factor.
    
 0.874
rap1b
RAP1B, member of RAS oncogene family.
    
 0.744
LOC114647779
Ras-related protein Rap-1A.
    
 0.744
ralgapb
Ral GTPase activating protein non-catalytic beta subunit.
   
 0.727
rap2b
RAP2B, member of RAS oncogene family.
    
 0.716
rap2a
RAP2A, member of RAS oncogene family.
    
 0.716
LOC114654251
Transmembrane protein 127-like.
    
 
 0.639
rap2c
RAP2C, member of RAS oncogene family.
    
 0.612
lzts2
Leucine zipper tumor suppressor 2.
    
 
 0.596
lzts1
Leucine zipper tumor suppressor 1.
    
 
 0.592
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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