Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC114652844RNA-binding protein 4.1-like. (427 aa)    
Predicted Functional Partners:
traf2
TNF receptor associated factor 2.
    
  0.830
ENSECRP00000020973
annotation not available
   
 
 0.733
LOC114660182
60S ribosomal protein L26.
    
 
 0.713
gpatch4
G-patch domain containing 4.
    
   0.711
pop4
POP4 homolog, ribonuclease P/MRP subunit.
    
   0.709
LOC114657700
TNF receptor-associated factor 2-like.
    
  0.702
LOC114657073
TNF receptor-associated factor 2-like.
    
  0.702
LOC114659471
RNA-binding protein 39-like.
  
 
 0.662
ier3ip1
Immediate early response 3 interacting protein 1.
      
 0.619
LOC114665454
Serine/arginine-rich splicing factor 10-like.
   
 
 0.586
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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