Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
snap47Synaptosome associated protein 47. (422 aa)    
Predicted Functional Partners:
stx18
Syntaxin 18.
    
 0.990
stx7
Syntaxin 7.
    
 0.989
stx12
Syntaxin 12.
    
 0.989
vamp7
Vesicle associated membrane protein 7.
    
 0.967
vamp4
Vesicle associated membrane protein 4.
   
 0.962
stx17
Syntaxin 17.
    
 0.960
ykt6
YKT6 v-SNARE homolog.
    
 0.937
vti1a
Vesicle transport through interaction with t-SNAREs 1A.
    
 0.922
LOC114651656
Vesicle-trafficking protein SEC22b-like.
    
 
 0.914
sec22b
SEC22 homolog B, vesicle trafficking protein.
    
 
 0.914
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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