STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
jmjd4Jumonji domain containing 4. (422 aa)    
Predicted Functional Partners:
etf1
Eukaryotic translation termination factor 1.
    
 0.994
ogfod1
2-oxoglutarate and iron dependent oxygenase domain containing 1.
      
 0.724
pole4
DNA polymerase epsilon 4, accessory subunit.
    
   0.723
depdc5
DEP domain containing 5, GATOR1 subcomplex subunit.
   
 
  0.715
wdr59
WD repeat domain 59.
     
  0.697
mios
Meiosis regulator for oocyte development.
     
  0.697
seh1l
SEH1 like nucleoporin.
     
  0.697
nprl3
NPR3 like, GATOR1 complex subunit.
     
  0.697
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
     
  0.697
nprl2
NPR2 like, GATOR1 complex subunit.
     
  0.697
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.