STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppp1cbProtein phosphatase 1 catalytic subunit beta. (343 aa)    
Predicted Functional Partners:
itsn2
Intersectin 2.
    
 0.984
wdr82
WD repeat domain 82.
    
 0.969
cpsf3
Cleavage and polyadenylation specific factor 3.
   
 0.964
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.961
cpsf2
Cleavage and polyadenylation specific factor 2.
   
 0.960
ppp1r7
Protein phosphatase 1 regulatory subunit 7.
 
 
 0.957
wdr33
WD repeat domain 33.
   
 0.956
LOC114648141
Protein phosphatase 1 regulatory subunit 12B-like.
  
 0.948
eif2s1
Eukaryotic translation initiation factor 2 subunit alpha.
   
 0.946
ssu72
SSU72 homolog, RNA polymerase II CTD phosphatase.
    
 0.939
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.