STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pum2Pumilio RNA binding family member 2. (1064 aa)    
Predicted Functional Partners:
LOC114651669
Nanos homolog 1-like.
   
 0.857
ENSECRP00000026640
annotation not available
   
 0.854
ENSECRP00000000957
annotation not available
   
 0.787
LOC114650864
Cytochrome c oxidase copper chaperone.
    
 
 0.769
edaradd
EDAR associated death domain.
   
 0.744
ENSECRP00000001571
annotation not available
   
 0.729
gak
Cyclin G associated kinase.
   
 0.729
cnot7
CCR4-NOT transcription complex subunit 7.
    
 
 0.726
cnot8
CCR4-NOT transcription complex subunit 8.
    
 
 0.726
LOC114659363
Uncharacterized LOC114659363.
     
 0.715
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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