STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cep78Centrosomal protein 78. (704 aa)    
Predicted Functional Partners:
ddb1
Damage specific DNA binding protein 1.
    
 
 0.938
fgfr1op
FGFR1 oncogene partner.
    
   0.932
ubr5
Ubiquitin protein ligase E3 component n-recognin 5.
    
 
 0.905
dcaf1
DDB1 and CUL4 associated factor 1.
    
 
 0.904
ENSECRP00000021910
annotation not available
   
 0.774
ENSECRP00000015903
annotation not available
    
 0.773
ENSECRP00000015913
annotation not available
    
 0.773
cep290
Centrosomal protein 290.
    
 0.773
cep70
Centrosomal protein 70.
     
 0.753
plk2
Polo like kinase 2.
     
  0.753
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.