STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col12a1Collagen type XII alpha 1 chain. (1819 aa)    
Predicted Functional Partners:
ENSECRP00000011256
annotation not available
    
  0.735
tep1
Telomerase associated protein 1.
    
  0.616
tep1-2
Telomerase associated protein 1.
    
  0.616
LOC114656897
Complement C1q subcomponent subunit C-like.
    
  0.565
lig1
DNA ligase 1.
    
 0.516
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.500
evpl
Envoplakin.
  
  0.495
itgb6
Integrin subunit beta 6.
    
 0.489
itgb4
Integrin subunit beta 4.
    
0.489
pcolce2
Procollagen C-endopeptidase enhancer 2.
    
 0.488
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.