STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frg1FSHD region gene 1. (255 aa)    
Predicted Functional Partners:
cwc22
CWC22 spliceosome associated protein homolog.
   
   0.982
prpf8
pre-mRNA processing factor 8.
    
 
 0.855
prpf19
pre-mRNA processing factor 19.
    
   0.817
cdc40
Cell division cycle 40.
    
   0.815
snrpf
Small nuclear ribonucleoprotein polypeptide F.
    
 
 0.811
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
    
 
 0.806
eftud2
Elongation factor Tu GTP binding domain containing 2.
    
   0.791
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
   0.775
syf2
SYF2 pre-mRNA splicing factor.
   
   0.770
ppie
Peptidylprolyl isomerase E.
    
   0.769
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.