STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114651962Toll-like receptor 3. (460 aa)    
Predicted Functional Partners:
gne
Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.
  
 
 0.801
pigm
Phosphatidylinositol glycan anchor biosynthesis class M.
     
 0.790
pigb
Phosphatidylinositol glycan anchor biosynthesis class B.
     
 0.751
pigv
Phosphatidylinositol glycan anchor biosynthesis class V.
    
 0.747
b4galnt1
beta-1,4-N-acetyl-galactosaminyltransferase 1.
     
 0.739
ENSECRP00000012486
annotation not available
   
 0.736
LOC114660490
Ganglioside GM2 activator-like.
    
 0.736
alg3
ALG3 alpha-1,3- mannosyltransferase.
     
 0.726
st8sia1
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1.
     
 0.724
st3gal5
ST3 beta-galactoside alpha-2,3-sialyltransferase 5.
     
 0.724
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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