STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000002874annotation not available (187 aa)    
Predicted Functional Partners:
fcn3
Ficolin 3.
 
   
  0.901
sdc1
Syndecan 1.
     
 0.844
LOC114659403
Syndecan-4-like.
     
 0.844
ENSECRP00000027622
annotation not available
     
 0.844
ptk2b
Protein tyrosine kinase 2 beta.
    
  0.840
ptk2
Protein tyrosine kinase 2.
    
  0.840
ENSECRP00000028048
annotation not available
    
  0.840
pdk3
Pyruvate dehydrogenase kinase 3.
     
 0.828
LOC114656569
3-methyl-2-oxobutanoate dehydrogenase [lipoamide] kinase, mitochondrial-like.
     
 0.828
pdk1
Pyruvate dehydrogenase kinase 1.
     
 0.828
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.