STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
babam2BRISC and BRCA1 A complex member 2. (386 aa)    
Predicted Functional Partners:
babam1
BRISC and BRCA1 A complex member 1.
    
 0.999
brcc3
BRCA1/BRCA2-containing complex subunit 3.
    
 0.999
abraxas2
Abraxas 2, BRISC complex subunit.
    
 0.998
brca1
BRCA1 DNA repair associated.
    
 0.990
uimc1
Ubiquitin interaction motif containing 1.
    
 0.987
bard1
BRCA1 associated RING domain 1.
   
 0.978
ENSECRP00000005112
annotation not available
    
 0.967
anapc5
Anaphase promoting complex subunit 5.
     
 0.954
shmt2
Serine hydroxymethyltransferase 2.
    
  0.953
shmt1
Serine hydroxymethyltransferase 1.
    
  0.953
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.