STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114653546Retinol dehydrogenase 12-like. (289 aa)    
Predicted Functional Partners:
dgat1
Diacylglycerol O-acyltransferase 1.
   
 
 0.838
pnpla4
Patatin like phospholipase domain containing 4.
     
 0.837
LOC114646944
Cytochrome P450 26A1.
  
 
 0.836
LOC114665146
All-trans-retinol 13,14-reductase-like.
    
 0.836
retsat
Retinol saturase.
    
 0.836
LOC114655916
Cytochrome P450 27C1-like.
  
 
  0.831
ptges3l
Prostaglandin E synthase 3 like.
  
 0.831
LOC114648548
Cytochrome b5 reductase 4.
  
 0.762
wwox
WW domain containing oxidoreductase.
 
  
   0.731
oxsm
3-oxoacyl-ACP synthase, mitochondrial.
  
 0.729
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.