STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube3dUbiquitin protein ligase E3D. (409 aa)    
Predicted Functional Partners:
ENSECRP00000022505
annotation not available
    
 0.966
ENSECRP00000022573
annotation not available
    
 0.966
cpsf3
Cleavage and polyadenylation specific factor 3.
    
 
 0.872
cpsf2
Cleavage and polyadenylation specific factor 2.
    
 
 0.696
ube2c
Ubiquitin conjugating enzyme E2 C.
    
 
 0.673
dclre1c
DNA cross-link repair 1C.
    
 
 0.589
dclre1b
DNA cross-link repair 1B.
    
 
 0.589
ints11
Integrator complex subunit 11.
    
 
 0.589
dclre1a
DNA cross-link repair 1A.
    
 
 0.589
LOC114666002
Integrator complex subunit 9-like.
    
 
 0.589
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.