STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
eif1adEukaryotic translation initiation factor 1A domain containing. (182 aa)    
Predicted Functional Partners:
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
   0.990
LOC114666740
Ubiquitin-like protein FUBI.
   
   0.990
riok1
RIO kinase 1.
   
 
 0.946
lrrc47
Leucine rich repeat containing 47.
   
 
 0.875
rps18
Ribosomal protein S18.
    
   0.827
rps15
Ribosomal protein S15.
    
   0.827
riok3
RIO kinase 3.
   
 
 0.799
rack1
Receptor for activated C kinase 1.
    
   0.784
rps11
Ribosomal protein S11.
    
   0.784
rps16
Ribosomal protein S16.
    
   0.782
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.