STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000003289annotation not available (90 aa)    
Predicted Functional Partners:
lmnb2
Lamin B2.
   
 0.810
lmna
Lamin A/C.
   
 0.810
lemd3
LEM domain containing 3.
   
 0.799
LOC114659471
RNA-binding protein 39-like.
   
 0.790
ankle2
Ankyrin repeat and LEM domain containing 2.
    
 0.775
LOC114667828
lamin-L(III)-like.
   
 0.774
lmnb1
Lamin B1.
   
 0.769
lmntd1
Lamin tail domain containing 1.
   
 0.755
vrk1
VRK serine/threonine kinase 1.
    
 0.738
vrk2
VRK serine/threonine kinase 2.
    
 0.738
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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