STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crxCone-rod homeobox. (291 aa)    
Predicted Functional Partners:
znf366
Zinc finger protein 366.
    
 
 0.513
rorb
RAR related orphan receptor B.
    
 
 0.504
foxa2
Forkhead box A2.
   
 
 0.484
foxa1
Forkhead box A1.
   
 
 0.484
hhex
Hematopoietically expressed homeobox.
   
  
 0.481
ENSECRP00000012072
annotation not available
    
 
 0.479
nr2e3
Nuclear receptor subfamily 2 group E member 3.
   
 
 0.475
fgf5
Fibroblast growth factor 5.
    
 
 0.466
nr2e1
Nuclear receptor subfamily 2 group E member 1.
   
 
 0.462
chrd
Chordin.
    
 
 0.435
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.