STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
primpolPrimase and DNA directed polymerase. (542 aa)    
Predicted Functional Partners:
rpa1
Replication protein A1.
   
 
 0.990
smarcal1
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1.
    
 
 0.983
clspn
Claspin.
   
 
 0.968
timeless
Timeless circadian regulator.
   
 
 0.965
tipin
TIMELESS interacting protein.
    
 
 0.964
rpa3
Replication protein A3.
   
 
 0.958
rfwd3
Ring finger and WD repeat domain 3.
    
   0.956
zranb3
Zinc finger RANBP2-type containing 3.
    
 
 0.914
ska1
Spindle and kinetochore associated complex subunit 1.
   
 0.859
ENSECRP00000019765
annotation not available
   
 0.855
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.