STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114651983Caspase-7-like. (261 aa)    
Predicted Functional Partners:
apaf1
Apoptotic peptidase activating factor 1.
    
 0.920
LOC114650566
Inhibitor of apoptosis protein-like.
   
 0.898
ENSECRP00000012448
annotation not available
   
 0.895
xiap
X-linked inhibitor of apoptosis.
   
 0.895
birc5
Baculoviral IAP repeat containing 5.
   
 0.895
parp1
poly(ADP-ribose) polymerase 1.
    
 0.876
ENSECRP00000005558
annotation not available
    
 0.875
appl2
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 2.
    
 0.873
appl1
Adaptor protein, phosphotyrosine interacting with PH domain and leucine zipper 1.
    
 0.873
casp8
Caspase 8.
  
  
 
0.845
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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