STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114664298Putative nuclease HARBI1. (440 aa)    
Predicted Functional Partners:
sorl1
Sortilin related receptor 1.
    
 0.728
ntf3
Neurotrophin 3.
    
  0.660
LOC114660777
Neurotrophin-4-like.
    
  0.660
ptk7
Protein tyrosine kinase 7 (inactive).
    
  0.630
fcer1g
Fc fragment of IgE receptor Ig.
   
 
 0.558
LOC114663558
Tumor necrosis factor receptor superfamily member 16-like.
    
  0.510
ngf
Nerve growth factor.
     
 0.484
bdnf
Brain derived neurotrophic factor.
     
 0.471
glod4
Glyoxalase domain containing 4.
    
  0.469
pdgfb
Platelet derived growth factor subunit B.
   
 
  0.461
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.