STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000003843annotation not available (264 aa)    
Predicted Functional Partners:
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
   
  0.919
LOC114666740
Ubiquitin-like protein FUBI.
   
  0.919
rpl23a
Ribosomal protein L23a.
  
 0.845
rpl31
Ribosomal protein L31.
   
 0.844
rpl35
Ribosomal protein L35.
  
 0.844
rpl29
Ribosomal protein L29.
   
 0.842
rpl30
Ribosomal protein L30.
  
 0.841
rpl35a
Ribosomal protein L35a.
   
 0.840
rpl24
Ribosomal protein L24.
  
 0.840
LOC114662449
60S ribosomal protein L36a.
  
 0.835
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.