STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cars1cysteinyl-tRNA synthetase 1. (751 aa)    
Predicted Functional Partners:
eef1g
Eukaryotic translation elongation factor 1 gamma.
   
 0.960
pigl
Phosphatidylinositol glycan anchor biosynthesis class L.
  
 
 0.935
cbs
Cystathionine beta-synthase.
  
 0.928
cth
Cystathionine gamma-lyase.
    
 0.906
psph
Phosphoserine phosphatase.
  
 
 0.876
yars1
tyrosyl-tRNA synthetase 1.
  
 
 0.858
eef1d
Eukaryotic translation elongation factor 1 delta.
   
 0.852
lars1
leucyl-tRNA synthetase 1.
  
 
 0.849
LOC114650549
valine--tRNA ligase-like.
  
 0.846
LOC114650119
Probable cysteine--tRNA ligase, mitochondrial.
  
  
 
0.846
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.