igfbp1 protein (Erpetoichthys calabaricus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

igfbp1

Insulin like growth factor binding protein 1. (265 aa)

Predicted Functional Partners:

igf2

0.797

igf1

0.758

mmp14

0.654

mmp15

0.548

igfals

0.539

ENSECRP00000020059

0.480

rbp2

0.428

vsig10

0.424

tmem248

0.422

taok1

0.422

Your Current Organism:

Erpetoichthys calabaricus

NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSECRP00000020059	igfbp1	ENSECRP00000020059	ENSECRP00000004162	annotation not available	Insulin like growth factor binding protein 1.	0.480
igf1	igfbp1	ENSECRP00000008542	ENSECRP00000004162	Insulin like growth factor 1.	Insulin like growth factor binding protein 1.	0.758
igf2	igfbp1	ENSECRP00000002644	ENSECRP00000004162	Insulin like growth factor 2.	Insulin like growth factor binding protein 1.	0.797
igfals	igfbp1	ENSECRP00000023546	ENSECRP00000004162	Insulin like growth factor binding protein acid labile subunit.	Insulin like growth factor binding protein 1.	0.539
igfbp1	ENSECRP00000020059	ENSECRP00000004162	ENSECRP00000020059	Insulin like growth factor binding protein 1.	annotation not available	0.480
igfbp1	igf1	ENSECRP00000004162	ENSECRP00000008542	Insulin like growth factor binding protein 1.	Insulin like growth factor 1.	0.758
igfbp1	igf2	ENSECRP00000004162	ENSECRP00000002644	Insulin like growth factor binding protein 1.	Insulin like growth factor 2.	0.797
igfbp1	igfals	ENSECRP00000004162	ENSECRP00000023546	Insulin like growth factor binding protein 1.	Insulin like growth factor binding protein acid labile subunit.	0.539
igfbp1	mmp14	ENSECRP00000004162	ENSECRP00000007354	Insulin like growth factor binding protein 1.	Matrix metallopeptidase 14.	0.654
igfbp1	mmp15	ENSECRP00000004162	ENSECRP00000008355	Insulin like growth factor binding protein 1.	Matrix metallopeptidase 15.	0.548
igfbp1	rbp2	ENSECRP00000004162	ENSECRP00000008993	Insulin like growth factor binding protein 1.	Retinol binding protein 2.	0.428
igfbp1	taok1	ENSECRP00000004162	ENSECRP00000013015	Insulin like growth factor binding protein 1.	TAO kinase 1.	0.422
igfbp1	tmem248	ENSECRP00000004162	ENSECRP00000010730	Insulin like growth factor binding protein 1.	Transmembrane protein 248.	0.422
igfbp1	vsig10	ENSECRP00000004162	ENSECRP00000030063	Insulin like growth factor binding protein 1.	V-set and immunoglobulin domain containing 10.	0.424
mmp14	igfbp1	ENSECRP00000007354	ENSECRP00000004162	Matrix metallopeptidase 14.	Insulin like growth factor binding protein 1.	0.654
mmp15	igfbp1	ENSECRP00000008355	ENSECRP00000004162	Matrix metallopeptidase 15.	Insulin like growth factor binding protein 1.	0.548
rbp2	igfbp1	ENSECRP00000008993	ENSECRP00000004162	Retinol binding protein 2.	Insulin like growth factor binding protein 1.	0.428
taok1	igfbp1	ENSECRP00000013015	ENSECRP00000004162	TAO kinase 1.	Insulin like growth factor binding protein 1.	0.422
tmem248	igfbp1	ENSECRP00000010730	ENSECRP00000004162	Transmembrane protein 248.	Insulin like growth factor binding protein 1.	0.422
vsig10	igfbp1	ENSECRP00000030063	ENSECRP00000004162	V-set and immunoglobulin domain containing 10.	Insulin like growth factor binding protein 1.	0.424