STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atad1ATPase family AAA domain containing 1. (434 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.991
tep1
Telomerase associated protein 1.
  
 0.952
tep1-2
Telomerase associated protein 1.
  
 0.952
aldh18a1
Aldehyde dehydrogenase 18 family member A1.
    
 0.857
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
   
 0.841
pex19
Peroxisomal biogenesis factor 19.
    
 0.798
yod1
YOD1 deubiquitinase.
    
 0.797
LOC114651694-2
Charged multivesicular body protein 3.
   
 0.796
pex12
Peroxisomal biogenesis factor 12.
    
 0.789
atxn3
Ataxin 3.
   
 0.781
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.