STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
twnkTwinkle mtDNA helicase. (702 aa)    
Predicted Functional Partners:
helq
Helicase, POLQ like.
   
 
 0.875
polq
DNA polymerase theta.
   
 
 0.875
polg
DNA polymerase gamma, catalytic subunit.
   
 
 0.875
polrmt
RNA polymerase mitochondrial.
   
  
 0.621
ssbp1
Single stranded DNA binding protein 1.
   
  
 0.600
tfam
Transcription factor A, mitochondrial.
      
 0.564
polg2
DNA polymerase gamma 2, accessory subunit.
      
 0.563
mgme1
Mitochondrial genome maintenance exonuclease 1.
      
 0.556
dna2
DNA replication helicase/nuclease 2.
      
 0.555
LOC114649219
Deoxyguanosine kinase, mitochondrial-like.
      
 0.554
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.