STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114652713Complement factor D-like. (245 aa)    
Predicted Functional Partners:
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.779
ENSECRP00000022943
annotation not available
    
  0.779
ptk7
Protein tyrosine kinase 7 (inactive).
    
  0.630
ENSECRP00000011256
annotation not available
    
  0.614
LOC114661378
WD repeat-containing protein 90-like.
    
 0.558
sned1
Sushi, nidogen and EGF like domains 1.
    
  0.497
f3
Coagulation factor III, tissue factor.
    
  0.474
ENSECRP00000011435
annotation not available
    
  0.454
svep1
Sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1.
    
  0.436
LOC114647908
E-selectin-like.
    
  0.436
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.