STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smg5SMG5 nonsense mediated mRNA decay factor. (1129 aa)    
Predicted Functional Partners:
tert
Telomerase reverse transcriptase.
   
 0.989
smg7
SMG7 nonsense mediated mRNA decay factor.
   
0.986
upf3b
UPF3B regulator of nonsense mediated mRNA decay.
   
 0.985
upf1
UPF1 RNA helicase and ATPase.
   
 0.981
smg6
SMG6 nonsense mediated mRNA decay factor.
   
0.979
ENSECRP00000019237
annotation not available
   
 0.962
tep1
Telomerase associated protein 1.
    
 0.944
tep1-2
Telomerase associated protein 1.
    
 0.944
nop10
NOP10 ribonucleoprotein.
     
 0.938
rbm8a
RNA binding motif protein 8A.
    
 0.931
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.