STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pacrglParkin coregulated like. (222 aa)    
Predicted Functional Partners:
LOC114661378
WD repeat-containing protein 90-like.
    
 
 0.961
meig1
Meiosis/spermiogenesis associated 1.
    
 
 0.870
efhc1
EF-hand domain containing 1.
   
 
 0.865
efhc2
EF-hand domain containing 2.
   
 
 0.865
ENSECRP00000030181
annotation not available
   
   0.863
cfap52
Cilia and flagella associated protein 52.
   
 
 0.802
tekt2
Tektin 2.
   
 
 0.789
cfap126
Cilia and flagella associated protein 126.
   
 
 0.787
tekt3
Tektin 3.
   
   0.787
LOC114658213
Cilia- and flagella-associated protein 45-like.
    
 
 0.786
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.