STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fam160b1Family with sequence similarity 160 member B1. (755 aa)    
Predicted Functional Partners:
pald1
Phosphatase domain containing paladin 1.
      
 0.661
LOC114654110
Protein Hook homolog 3-like.
    
 
 0.643
hook1
Hook microtubule tethering protein 1.
    
 
 0.643
aktip
AKT interacting protein.
    
 
 0.630
fcf1
FCF1 rRNA-processing protein.
    
 
 0.610
ptgfrn
Prostaglandin F2 receptor inhibitor.
      
 0.529
ankfy1
Ankyrin repeat and FYVE domain containing 1.
      
 0.529
hook2
Hook microtubule tethering protein 2.
    
 
 0.523
tnfsf13b
TNF superfamily member 13b.
    
   0.505
LOC114652809
Integrator complex subunit 10-like.
      
 0.472
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.