STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudt3Nudix hydrolase 3. (178 aa)    
Predicted Functional Partners:
LOC114656119
Thioredoxin domain-containing protein 3 homolog.
  
 
 0.884
ENSECRP00000000849
annotation not available
  
  0.871
nudt12
Nudix hydrolase 12.
   
 0.851
ENSECRP00000011043
annotation not available
    
 0.845
LOC114655300
Transient receptor potential cation channel subfamily M member 2-like.
    
 0.845
edc4
Enhancer of mRNA decapping 4.
    
 0.843
xrn1
5'-3' exoribonuclease 1.
    
 0.838
dcp1a
Decapping mRNA 1A.
    
 0.831
dcp1b
Decapping mRNA 1B.
    
 0.831
edc3
Enhancer of mRNA decapping 3.
  
 0.801
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.