STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114645730Apolipoprotein L3-like. (298 aa)    
Predicted Functional Partners:
fancm
FA complementation group M.
    
 0.920
h6pd
Hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase.
     
 0.694
lin9
Lin-9 DREAM MuvB core complex component.
    
 0.543
lin52
Lin-52 DREAM MuvB core complex component.
    
 0.531
lin54
Lin-54 DREAM MuvB core complex component.
    
 0.529
med23
Mediator complex subunit 23.
    
  0.477
rpa1
Replication protein A1.
    
 0.475
meiob
Meiosis specific with OB-fold.
    
 0.475
ercc4
ERCC excision repair 4, endonuclease catalytic subunit.
    
  0.473
LOC114641148
Centromere protein Q-like.
    
  0.468
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.