Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
znf800Zinc finger protein 800. (694 aa)    
Predicted Functional Partners:
rrp8
Ribosomal RNA processing 8.
    
   0.729
znf622
Zinc finger protein 622.
    
 
 0.679
grwd1
Glutamate rich WD repeat containing 1.
      
 0.654
ENSECRP00000011256
annotation not available
    
  0.585
nolc1
Nucleolar and coiled-body phosphoprotein 1.
    
 
 0.560
gart
annotation not available
     
  0.531
pm20d2
Peptidase M20 domain containing 2.
    
 
 0.525
qser1
Glutamine and serine rich 1.
   
  
 0.499
mta2
Metastasis associated 1 family member 2.
    
  0.472
LOC114654989
Metastasis-associated protein MTA1-like.
    
  0.472
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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