STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atxn7l1Ataxin 7 like 1. (781 aa)    
Predicted Functional Partners:
usp22
Ubiquitin specific peptidase 22.
    
 0.968
eny2
ENY2 transcription and export complex 2 subunit.
    
 0.968
taf12
TATA-box binding protein associated factor 12.
   
 0.967
tada3
Transcriptional adaptor 3.
    
 0.967
LOC114662098
Transcription initiation factor TFIID subunit 9-like.
    
 0.966
atxn7l3
Ataxin 7 like 3.
    
 0.966
taf6
TATA-box binding protein associated factor 6.
   
 0.965
taf10
TATA-box binding protein associated factor 10.
    
 0.965
sgf29
SAGA complex associated factor 29.
    
 0.963
ENSECRP00000008133
annotation not available
    
 0.960
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.