STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atp8b1ATPase phospholipid transporting 8B1. (1248 aa)    
Predicted Functional Partners:
tmem30a
Transmembrane protein 30A.
   
 0.812
LOC114650349
Cell cycle control protein 50A-like.
   
 0.812
LOC114664821
Cell cycle control protein 50A-like.
   
 0.801
LOC114656119
Thioredoxin domain-containing protein 3 homolog.
   
 0.754
pln
Phospholamban.
    
 0.730
ccdc47
Coiled-coil domain containing 47.
    
  0.592
LOC114657276
FXYD domain-containing ion transport regulator 6-like.
    
  0.592
atp9a
ATPase phospholipid transporting 9A (putative).
    
0.570
ccdc103
Coiled-coil domain containing 103.
    
 0.570
atp9b
ATPase phospholipid transporting 9B (putative).
    
0.570
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.