STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo2LIM domain only 2. (170 aa)    
Predicted Functional Partners:
tal1
TAL bHLH transcription factor 1, erythroid differentiation factor.
   
 0.992
LOC114661326
GATA-binding factor 2-like.
    
 0.985
ldb1
LIM domain binding 1.
    
 0.965
ldb2
LIM domain binding 2.
    
 0.952
tcf4
Transcription factor 4.
    
 0.857
tcf3
Transcription factor 3.
    
 0.857
tcf12
Transcription factor 12.
    
 0.857
gata2
GATA binding protein 2.
    
 0.834
gata4
GATA binding protein 4.
    
 0.808
gata6
GATA binding protein 6.
    
 0.808
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.